RnoEX0071889 @ rn6
Exon Skipping
Gene
ENSRNOG00000060912 | Qars
Description
glutaminyl-tRNA synthetase [Source:RGD Symbol;Acc:1359448]
Coordinates
chr8:117300748-117301232:+
Coord C1 exon
chr8:117300748-117300819
Coord A exon
chr8:117300934-117301019
Coord C2 exon
chr8:117301146-117301232
Length
86 bp
Sequences
Splice sites
3' ss Seq
CATCAGATTTGTTCTGGCAGGTG
3' ss Score
6.93
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTGAAGTGGCTGGCCAGACCCTGTCTCTAATGGAGCAGCTCCGGGGAGAGGCCCTGAAGTTTCATAAACCAG
Seq A exon
GTGAGAACTATAAGACGCCAGGCTATGTGACCACGCCACATACCATGGATCTGCTAAAGCAGCACCTGGAGATCACTGGGGGACAG
Seq C2 exon
GTACGAACCCGGTTTCCCCCAGAGCCCAATGGAATCCTGCATATTGGACATGCCAAAGCCATCAATTTCAACTTTGGTTATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060912-'11-16,'11-15,12-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.138 C2=0.103
Domain overlap (PFAM):
C1:
PF0455710=tRNA_synt_1c_R2=FE(25.8=100)
A:
PF0455710=tRNA_synt_1c_R2=PD(22.6=72.4),PF0074916=tRNA-synt_1c=PU(0.1=0.0)
C2:
PF0074916=tRNA-synt_1c=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCAGACCCTGTCTCTAA
R:
GCATAACCAAAGTTGAAATTGATGGC
Band lengths:
146-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]