DreEX0060036 @ danRer10
Exon Skipping
Gene
ENSDARG00000010316 | qars
Description
glutaminyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-1011]
Coordinates
chr8:46367768-46368770:-
Coord C1 exon
chr8:46368699-46368770
Coord A exon
chr8:46368530-46368615
Coord C2 exon
chr8:46367768-46367854
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTTTTATCTTCTCGGCACAGGGG
3' ss Score
7.59
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTGATGGGAACATTGAGAATAAGTCATTGATGGAGCAGCTGAGAGGAGAAGCTCTTAAGTTCCATAAGCCAG
Seq A exon
GGGAGAATTACAAAACGGAGGGTTATGTTGTAACACCTAACACCATGAACTTGCTGAAGAAGCACTTGGAAGAAACTGGAGGACAG
Seq C2 exon
GTCCGCACACGTTTCCCTCCTGAGCCTAATGGTATTCTGCATATCGGTCATGCCAAAGCAATCAACTTCAATTTTGGTTTCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010316-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=0.241 C2=0.345
Domain overlap (PFAM):
C1:
PF0455710=tRNA_synt_1c_R2=FE(25.8=100)
A:
PF0455710=tRNA_synt_1c_R2=PD(22.6=72.4),PF0074916=tRNA-synt_1c=PU(0.1=0.0)
C2:
PF0074916=tRNA-synt_1c=FE(16.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAACATTGAGAATAAGTCATTGA
R:
GGCGAAACCAAAATTGAAGTTGA
Band lengths:
152-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]