MmuEX6068940 @ mm10
Exon Skipping
Gene
ENSMUSG00000032604 | Qars
Description
glutaminyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:1915851]
Coordinates
chr9:108511139-108511618:+
Coord C1 exon
chr9:108511139-108511210
Coord A exon
chr9:108511331-108511416
Coord C2 exon
chr9:108511532-108511618
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTCTATTCTGATCCTGGCAGGTG
3' ss Score
8.47
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTGAAGTGGCTGGCCAGACCCTGTCTCTGATGGAGCAGCTCCGGGGGGAGGCACTTAAGTTTCATAAGCCAG
Seq A exon
GTGAGAACTACAAGACGCCAGGCTATGTGATCACTCCATATACCATGGATCTGCTGAAGCAGCACCTGGAGATCACTGGGGGACAG
Seq C2 exon
GTACGTACGCGGTTCCCTCCAGAGCCCAATGGAATCCTGCATATTGGACACGCCAAAGCCATCAATTTCAACTTTGGTTATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032604-'19-22,'19-21,22-22
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.017 C2=0.051
Domain overlap (PFAM):
C1:
PF0455710=tRNA_synt_1c_R2=PU(50.0=95.8)
A:
PF0455710=tRNA_synt_1c_R2=PD(22.6=72.4),PF0074916=tRNA-synt_1c=PU(4.8=13.8)
C2:
PF0455710=tRNA_synt_1c_R2=PD(10.0=26.7)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACCCTGTCTCTGATGGA
R:
GGCATAACCAAAGTTGAAATTGATGG
Band lengths:
143-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types