BtaEX6095659 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51879269-51879634:+
Coord C1 exon
chr22:51879269-51879337
Coord A exon
chr22:51879412-51879456
Coord C2 exon
chr22:51879572-51879634
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTGACATGTCATTCCCACAGGGG
3' ss Score
9.28
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GTGGCCGTGGACGAGCCAGGTTCTGGGCTCTCTAGAGAACAAGGACCCCCTGGATTCAAGGGTGCTAAG
Seq A exon
GGGGATCCAGGCAGTGATGGCGACCGAGGCCCCAAAGGAGACAGG
Seq C2 exon
GGTGAGCCGGGCATCAAGGGCGACCGGGGAGAGCCTGGACAGAGGGGTCCGAATGGCAGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'79-82,'79-80,80-82=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(10.3=30.4),PF0139113=Collagen=PU(23.5=69.6)
A:
PF0139113=Collagen=FE(20.6=100)
C2:
PF0139113=Collagen=FE(29.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACGAGCCAGGTTCTG
R:
CTGCCATTCGGACCCCTCT
Band lengths:
121-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]