RnoEX6037760 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117715240-117715597:+
Coord C1 exon
chr8:117715240-117715308
Coord A exon
chr8:117715383-117715427
Coord C2 exon
chr8:117715535-117715597
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTGACATCTAATCTAAACAGGGG
3' ss Score
7.22
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GTGGCCATTGAAGAGCTAGGTCCTGGACCCGCTAGAGAACAAGGACCTCCTGGACTCAAGGGTGCTAAG
Seq A exon
GGGGAGCCAGGCAGTGATGGTGTCCCAGGACCCAAAGGAGACAGG
Seq C2 exon
GGTGTACCCGGCATCAAAGGAGATGCAGGAGAGCCAGGAAAGAGGGGTCCTGATGGTAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'82-79,'82-78,83-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(1.6=4.3),PF0139113=Collagen=PU(24.2=69.6)
A:
PF0139113=Collagen=FE(21.2=100)
C2:
PF0139113=Collagen=FE(30.3=100),PF0139113=Collagen=PU(2.9=9.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCATTGAAGAGCTAGGT
R:
TGGGTTACCATCAGGACCCC
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]