BtaEX6095668 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51877421-51877785:+
Coord C1 exon
chr22:51877421-51877516
Coord A exon
chr22:51877628-51877663
Coord C2 exon
chr22:51877750-51877785
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCTGTCGTATCTCAGGGC
3' ss Score
10.29
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTCGTGACGGCCCCAAGGGTGAGCGTGGAGCTCCTGGTAGCCCTGGACTCCAGGGCCCCCCGGGCCTCCCAGGGCAGGTCGGCCCTCCCGGGCAG
Seq A exon
GGCTTCCCTGGCGTCCCGGGGAGTTCAGGCCCCAAG
Seq C2 exon
GGTGACCGTGGGGAGACTGGACCCAGAGGGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'68-72,'68-71,69-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(30.0=56.2)
A:
PF0139113=Collagen=FE(18.3=100)
C2:
PF0139113=Collagen=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGGGTGAGCGTGGAG
R:
CTCTGGGTCCAGTCTCCCC
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]