RnoEX6037769 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117713438-117713814:+
Coord C1 exon
chr8:117713438-117713533
Coord A exon
chr8:117713652-117713687
Coord C2 exon
chr8:117713779-117713814
Length
36 bp
Sequences
Splice sites
3' ss Seq
CATGTTCTATCGTATTTCAGGGT
3' ss Score
11.13
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTCCTGACGGTCCCAAGGGTGAACGCGGAGCTCCTGGTAATCCCGGACTCCAGGGTCCTCCGGGTCTCCCAGGGCAGGTCGGTCCTCCCGGCCAG
Seq A exon
GGTTTCCCTGGTGTCCCAGGAGTTACAGGTCCTAAG
Seq C2 exon
GGTGACCGTGGAGAGACTGGATCCAAAGGGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'73-70,'73-69,74-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(30.0=56.2)
A:
PF0139113=Collagen=FE(18.3=100)
C2:
PF0139113=Collagen=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACGGTCCCAAGGGTGAA
R:
GATCCAGTCTCTCCACGGTCA
Band lengths:
115-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]