BtaEX6095670 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51877165-51877516:+
Coord C1 exon
chr22:51877165-51877200
Coord A exon
chr22:51877274-51877309
Coord C2 exon
chr22:51877421-51877516
Length
36 bp
Sequences
Splice sites
3' ss Seq
AGCAGCCTTGTCTTCCTTAGGGA
3' ss Score
8.2
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GGAGAACCCGGGGACCCTGGAGAAGACGGGAGGAAG
Seq A exon
GGAGAGAAGGGAGATTCAGGCGCCCCTGGGAGAGAA
Seq C2 exon
GGTCGTGACGGCCCCAAGGGTGAGCGTGGAGCTCCTGGTAGCCCTGGACTCCAGGGCCCCCCGGGCCTCCCAGGGCAGGTCGGCCCTCCCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'66-70,'66-69,67-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(30.0=56.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGAAGACGGGAGGAAG
R:
GGAGTCCAGGGCTACCAGG
Band lengths:
73-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]