RnoEX6037771 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117713190-117713533:+
Coord C1 exon
chr8:117713190-117713225
Coord A exon
chr8:117713296-117713331
Coord C2 exon
chr8:117713438-117713533
Length
36 bp
Sequences
Splice sites
3' ss Seq
AAAAGCCTTATCTTCCTTAGGGA
3' ss Score
6.55
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GGAGAACCTGGGGATCCCGGAGAAGATGGAAGGAAG
Seq A exon
GGAGAAAAGGGAGATTCGGGTGTCCCTGGAAGGGAA
Seq C2 exon
GGTCCTGACGGTCCCAAGGGTGAACGCGGAGCTCCTGGTAATCCCGGACTCCAGGGTCCTCCGGGTCTCCCAGGGCAGGTCGGTCCTCCCGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'71-68,'71-67,72-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(30.0=56.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACCTGGGGATCCC
R:
CGACCTGCCCTGGGAGAC
Band lengths:
118-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]