BtaEX6095674 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51875622-51876431:+
Coord C1 exon
chr22:51875622-51875702
Coord A exon
chr22:51875931-51875966
Coord C2 exon
chr22:51876369-51876431
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGACTTGAGTCTCTCTTCAGGGT
3' ss Score
6.14
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
GGCGACCGGGGCCCTCCTGGCCTGGATGGCCGCAGTGGGCTGGATGGGAAACCGGGAGCCTCTGGTCCCCCTGGGCCGAAT
Seq A exon
GGTGCCATGGGCAAGGCCGGAGACCCAGGGAGAGAC
Seq C2 exon
GGACTTCCGGGCCTTCGAGGAGAACAGGGCCCCCCTGGCCCTGCTGGTCCCCCTGGAGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'62-66,'62-65,63-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(5.7=18.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCTGGCCTGGATGG
R:
GGGGGCCCTGTTCTCCTC
Band lengths:
104-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]