HsaEX6055809 @ hg19
Exon Skipping
Gene
ENSG00000114270 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:2214]
Coordinates
chr3:48615886-48616710:-
Coord C1 exon
chr3:48616630-48616710
Coord A exon
chr3:48616352-48616387
Coord C2 exon
chr3:48615886-48615948
Length
36 bp
Sequences
Splice sites
3' ss Seq
GACTTTGAGTCTCTCCTCAGGGT
3' ss Score
6.09
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
GGTGACCGGGGTCCCCCTGGGCTGGATGGCCGGAGCGGACTGGATGGGAAACCAGGAGCCGCTGGGCCCTCTGGGCCGAAT
Seq A exon
GGTGCTGCAGGCAAAGCTGGGGACCCAGGGAGAGAC
Seq C2 exon
GGGCTTCCAGGCCTCCGTGGAGAACAGGGCCTCCCTGGCCCCTCTGGTCCCCCTGGATTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114270-'62-65,'62-64,63-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(8.1=18.5),PF0139113=Collagen=FE(32.5=100),PF0139113=Collagen=PU(2.4=7.4)
A:
PF0139113=Collagen=FE(13.8=100),PF0139113=Collagen=FE(13.4=100)
C2:
PF0139113=Collagen=FE(22.7=100),PF0139113=Collagen=PU(19.8=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCCTGGGCTGGATG
R:
GACCAGAGGGGCCAGGGA
Band lengths:
120-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)