DreEX6023279 @ danRer10
Exon Skipping
Gene
ENSDARG00000021720 | col7a1
Description
collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]
Coordinates
chr6:40230709-40234795:-
Coord C1 exon
chr6:40234715-40234795
Coord A exon
chr6:40234590-40234625
Coord C2 exon
chr6:40230709-40230780
Length
36 bp
Sequences
Splice sites
3' ss Seq
GAATCTTTTTGGTTTTGTAGGGT
3' ss Score
7.36
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GGAGAACGAGGAGCGGCTGGTTTGGATGGACGCCCCGGTCAGGATGGGAAACCTGGGCCTCCTGGACCTCCTGGATTACGG
Seq A exon
GGTGACCCGGGAAAACAAGGGGATCCTGGAAGAGAT
Seq C2 exon
GGATTGGCAGGATTAAGAGGCCCTCAGGGTCCCCCAGGGCCGCCTGGGCCCCCAGGAGCTGATGGCACACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021720-'67-70,'67-69,68-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(34.7=100),PF0139113=Collagen=PU(11.4=33.3)
A:
PF0139113=Collagen=FE(15.3=100),PF0139113=Collagen=FE(13.4=100)
C2:
PF0139113=Collagen=PD(6.9=20.8),PF0139113=Collagen=FE(28.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGGTCAGGATGGGAAA
R:
AGGTGTGCCATCAGCTCCT
Band lengths:
121-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]