BtaEX6095681 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51874256-51874884:+
Coord C1 exon
chr22:51874256-51874327
Coord A exon
chr22:51874565-51874609
Coord C2 exon
chr22:51874858-51874884
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTGACCCTCTGCCTCTGCAGGGG
3' ss Score
10.53
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GGAGCGCCTGGAGCTCGGGGGCCTGTGGGTGAGAAGGGAGACCAGGGAGATCCTGGAGAGGAAGGACGAAAT
Seq A exon
GGGAGCCCTGGACCGTCTGGACCCAAGGGTGACCGTGGGGAGCCA
Seq C2 exon
GGTCCCCCAGGAGCCCCTGGACGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'55-58,'55-57,56-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(35.4=100)
A:
PF0139113=Collagen=FE(21.5=100),PF0139113=Collagen=PU(12.5=73.3)
C2:
PF0139113=Collagen=FE(12.3=100),PF0139113=Collagen=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]