GgaEX1016963 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9333488-9333837:+
Coord C1 exon
chr12:9333488-9333559
Coord A exon
chr12:9333677-9333721
Coord C2 exon
chr12:9333811-9333837
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCACCCATCCCTCTCCACAGGGC
3' ss Score
11.28
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGGCTGCCTGGATACCGTGGCCCCCCTGGAGAGAAGGGCGAACTCGGAGACCCAGGTCCTGAAGGCAGAAAT
Seq A exon
GGCATTCCCGGAGCACCTGGCACCAAGGGTGACCGTGGGGAGCCG
Seq C2 exon
GGCCCCCCTGGACTCCCAGGACGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'49-53,'49-52,50-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(21.4=62.5),PF0139113=Collagen=FE(33.8=100)
A:
PF0139113=Collagen=FE(20.6=100)
C2:
PF0139113=Collagen=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGCCTGGATACCGT
R:
AGCTCGTCCTGGGAGTCCA
Band lengths:
99-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]