MmuEX6069104 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108968595-108969130:+
Coord C1 exon
chr9:108968595-108968639
Coord A exon
chr9:108968877-108968903
Coord C2 exon
chr9:108969101-108969130
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTAGTAATTTCTTTTTCCAGGGT
3' ss Score
7.73
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GGCAGCCCTGGATCATCTGGACCCAAGGGTGACCGTGGGGAGCCT
Seq A exon
GGTCCCCCAGGTCCCCCTGGACGGCTG
Seq C2 exon
GTGGATGCAGGCATTGAATCCAGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'62-71,'62-69,64-71=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.3=100)
A:
PF0139113=Collagen=FE(11.6=100)
C2:
PF0139113=Collagen=PD(11.6=80.0),PF0139113=Collagen=PU(3.2=20.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCCTGGATCATCTGGA
R:
TGTCTCTGGATTCAATGCCTGC
Band lengths:
72-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types