MmuEX6069104 @ mm9
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108870640-108871175:+
Coord C1 exon
chr9:108870640-108870684
Coord A exon
chr9:108870922-108870948
Coord C2 exon
chr9:108871146-108871175
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTAGTAATTTCTTTTTCCAGGGT
3' ss Score
7.73
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GGCAGCCCTGGATCATCTGGACCCAAGGGTGACCGTGGGGAGCCT
Seq A exon
GGTCCCCCAGGTCCCCCTGGACGGCTG
Seq C2 exon
GTGGATGCAGGCATTGAATCCAGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'58-60,'58-58,59-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.3=100)
A:
PF0139113=Collagen=FE(11.6=100)
C2:
PF0139113=Collagen=PD(11.6=80.0),PF0139113=Collagen=PU(3.2=20.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCCTGGATCATCTGGA
R:
TGTCTCTGGATTCAATGCCTGC
Band lengths:
72-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: