DreEX0023503 @ danRer10
Exon Skipping
Gene
ENSDARG00000021720 | col7a1
Description
collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]
Coordinates
chr6:40239213-40240152:-
Coord C1 exon
chr6:40240108-40240152
Coord A exon
chr6:40239945-40240016
Coord C2 exon
chr6:40239213-40239257
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTGGTCTATTAATGTTTTAGGGA
3' ss Score
8.22
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
GGAGAACCTGGGTTGCCGGGTAAACCAGGGGAGAGAGGTCTAAGA
Seq A exon
GGACTGCCAGGTCAATCAGGTCAACCTGGGACAAAAGGAGACACAGGCGATCCAGGGGAAGATGGACGAAAT
Seq C2 exon
GGTACCCCAGGCACAATGGGACCAAGAGGCCCAAAGGGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021720-'59-62,'59-61,60-62
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(14.7=100),PF0139113=Collagen=PU(20.0=93.3)
A:
PF0139113=Collagen=PD(12.6=50.0),PF0139113=Collagen=FE(32.9=100)
C2:
PF0139113=Collagen=FE(20.0=100),PF0139113=Collagen=PU(10.0=53.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACCTGGGTTGCCGG
R:
TGATCTCCCTTTGGGCCTCTT
Band lengths:
88-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]