BtaEX6095682 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51874030-51874609:+
Coord C1 exon
chr22:51874030-51874074
Coord A exon
chr22:51874256-51874327
Coord C2 exon
chr22:51874565-51874609
Length
72 bp
Sequences
Splice sites
3' ss Seq
ACACCAGCTATTCTTCTCAGGGA
3' ss Score
4.84
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGTGACCCAGGTTTGCCTGGAAAAGCTGGCGAGCGTGGCCTTCGG
Seq A exon
GGAGCGCCTGGAGCTCGGGGGCCTGTGGGTGAGAAGGGAGACCAGGGAGATCCTGGAGAGGAAGGACGAAAT
Seq C2 exon
GGGAGCCCTGGACCGTCTGGACCCAAGGGTGACCGTGGGGAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'54-57,'54-56,55-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(16.9=73.3)
A:
PF0139113=Collagen=FE(35.4=100)
C2:
PF0139113=Collagen=FE(21.5=100),PF0139113=Collagen=PU(12.5=73.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTTGCCTGGAAAAGCTGG
R:
CTCCCCACGGTCACCCTT
Band lengths:
79-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]