RnoEX6037782 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117709696-117710303:+
Coord C1 exon
chr8:117709696-117709740
Coord A exon
chr8:117709970-117710041
Coord C2 exon
chr8:117710259-117710303
Length
72 bp
Sequences
Splice sites
3' ss Seq
AAACCAACTGTCCTTTTCAGGGG
3' ss Score
8.15
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGTGAGCCAGGTTTGCCTGGAAAAGCAGGTGAACGCGGCCTCCGG
Seq A exon
GGGGCACCTGGGCCCCGGGGGCCTGTGGGTGAGAAGGGGAATGAGGGGGATCCTGGAGAAGATGGCCGGAAT
Seq C2 exon
GGCACCCCTGGACCATCTGGACCCAAGGGTGACCGTGGGGAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'59-56,'59-55,60-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.7=100),PF0139113=Collagen=PU(18.3=73.3)
A:
PF0139113=Collagen=PD(3.6=12.5),PF0139113=Collagen=FE(38.3=100)
C2:
PF0139113=Collagen=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTTGCCTGGAAAAGCAGG
R:
CTCCCCACGGTCACCCTT
Band lengths:
79-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]