HsaEX6055803 @ hg19
Exon Skipping
Gene
ENSG00000114270 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:2214]
Coordinates
chr3:48617218-48617777:-
Coord C1 exon
chr3:48617733-48617777
Coord A exon
chr3:48617464-48617490
Coord C2 exon
chr3:48617218-48617247
Length
27 bp
Sequences
Splice sites
3' ss Seq
ATAATCATTTCCTTTCCCAGGGT
3' ss Score
9.04
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GGCAGCCCTGGATCATCTGGACCCAAGGGTGACCGTGGGGAGCCG
Seq A exon
GGTCCCCCAGGACCCCCGGGACGGCTG
Seq C2 exon
GTAGACACAGGACCTGGAGCCAGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114270-'56-59,'56-58,57-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(15.2=93.3)
A:
PF0139113=Collagen=FE(11.8=100)
C2:
PF0139113=Collagen=PD(10.3=70.0),PF0139113=Collagen=PU(6.5=40.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTGGATCATCTGGACC
R:
CTTCTCTCTGGCTCCAGGTCC
Band lengths:
72-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)