BtaEX6095687 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51873205-51873524:+
Coord C1 exon
chr22:51873205-51873258
Coord A exon
chr22:51873333-51873392
Coord C2 exon
chr22:51873489-51873524
Length
60 bp
Sequences
Splice sites
3' ss Seq
TCTGATCCTTCCTTCCACAGGGC
3' ss Score
12.43
5' ss Seq
CGAGTGCGT
5' ss Score
5.03
Exon sequences
Seq C1 exon
GGAGATATGGGCCCCCCCGGGCCCAAAGGAGCTACCGGATTCAAAGGGGAACAG
Seq A exon
GGCTCACCTGGCTTGGCTCTTCCTGGAGACCCTGGCCCCAAGGGAGACCCTGGAGGCCGA
Seq C2 exon
GGTCCCATTGGCCTCACTGGCAGAGCAGGACCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'48-52,'48-51,49-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAAAGGAGCTACCGGATT
R:
GGGGTCCTGCTCTGCCAG
Band lengths:
68-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]