MmuEX6069111 @ mm9
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108869217-108869538:+
Coord C1 exon
chr9:108869217-108869270
Coord A exon
chr9:108869350-108869409
Coord C2 exon
chr9:108869503-108869538
Length
60 bp
Sequences
Splice sites
3' ss Seq
ACTGATCATTCCCTCTACAGGGC
3' ss Score
10.34
5' ss Seq
AGGGTGACT
5' ss Score
2.76
Exon sequences
Seq C1 exon
GGAGAGGCTGGGCTCCCTGGGCCCAGAGGAGCTTCTGGAAGCAAAGGAGAGCAG
Seq A exon
GGCGCACCTGGATTGGCTCTTCCTGGAGATCCTGGCCCCAAAGGAGACCCTGGAGACAGG
Seq C2 exon
GGTCCCATTGGCCTCACTGGAAGGGCAGGACCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'50-50,'50-49,51-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGCTGGGCTCCCTG
R:
GTCCTGCCCTTCCAGTGAGG
Band lengths:
84-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: