RnoEX6037786 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117708733-117709052:+
Coord C1 exon
chr8:117708733-117708786
Coord A exon
chr8:117708865-117708924
Coord C2 exon
chr8:117709017-117709052
Length
60 bp
Sequences
Splice sites
3' ss Seq
ACTGATCATTCCATCTACAGGGT
3' ss Score
9.07
5' ss Seq
AGAGTGACT
5' ss Score
-2.53
Exon sequences
Seq C1 exon
GGAGATGCTGGGCTCCCTGGGCCCAGAGGAGCTTCTGGAATCAAAGGAGAGCAG
Seq A exon
GGTGCACCTGGGTTGGCTCTTCCTGGAGACCCTGGCCCCAAAGGAGACCCTGGAGACAGA
Seq C2 exon
GGTCCCATTGGCCTCACTGGCAGGGCAGGACCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'53-51,'53-50,54-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(15.5=65.0)
C2:
PF0139113=Collagen=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGCTGGGCTCCCTG
R:
TCCTGCCCTGCCAGTGAG
Band lengths:
84-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]