BtaEX6095705 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51869128-51869430:+
Coord C1 exon
chr22:51869128-51869154
Coord A exon
chr22:51869249-51869293
Coord C2 exon
chr22:51869368-51869430
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCACTGATCACCTTTCCTAGGGC
3' ss Score
7.12
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGCCAGAAGGGGGAACCCGGACAGATG
Seq A exon
GGCCTGAAAGGACAAGCCGGGCCTCCTGGCCCCCCCGGCCTCCCG
Seq C2 exon
GGCAGGATTGGTGCTCCTGGCCCCCAGGGACCTCCTGGAAGTGCTTCTGCGAAGGGCGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'28-31,'28-30,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.1=100)
A:
PF0139113=Collagen=FE(23.0=100)
C2:
PF0139113=Collagen=FE(32.8=100),PF0139113=Collagen=PU(7.6=23.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]