GgaEX1066294 @ galGal4
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr12:9070382-9070839:+
Coord C1 exon
chr12:9070382-9070408
Coord A exon
chr12:9070519-9070563
Coord C2 exon
chr12:9070747-9070839
Length
45 bp
Sequences
Splice sites
3' ss Seq
GGCTGGCTTTGTCTCTGCAGGGG
3' ss Score
9.21
5' ss Seq
CCGGTAAAG
5' ss Score
6.84
Exon sequences
Seq C1 exon
GGAGAGAAGGGGGAGCCTGGTGTGGCA
Seq A exon
GGGCCACAGGGGCGTGTGGGGCAGCCAGGCCCCCCTGGAGAACCG
Seq C2 exon
GGCCGCCATGGACTGCCTGGCCCTCCAGGACCTGTGGGACCACGAGGGCCACCAGGAGAGAGCGTTGAGCAGCCGGGCAAGAAGGGGGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'30-31,'30-30,31-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAAGGGGGAGCCTGG
R:
CCTGTCCCCCTTCTTGCCC
Band lengths:
119-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]