RnoEX6037804 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117704546-117704840:+
Coord C1 exon
chr8:117704546-117704572
Coord A exon
chr8:117704663-117704707
Coord C2 exon
chr8:117704778-117704840
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCACTAATTACTCCTTTTAGGGA
3' ss Score
8.05
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGCCAGAAGGGGGAGCCTGGAGTGACG
Seq A exon
GGACCGCAAGGACAGGCTGGACCTCCTGGTCCCCCCGGTCTCCCG
Seq C2 exon
GGCAGGACCGGTGCTCCAGGCCCACAAGGTGCTCCCGGAAGTACCCAAGCAAAAGGCGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'34-32,'34-31,35-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.3=100)
A:
PF0139113=Collagen=FE(23.3=100)
C2:
PF0139113=Collagen=FE(33.3=100),PF0139113=Collagen=PU(8.1=23.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGGGGGAGCCTGGAG
R:
CTCGCCTTTTGCTTGGGTACT
Band lengths:
84-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]