HsaEX6055779 @ hg38
Exon Skipping
Gene
ENSG00000114270 | COL7A1
Description
collagen type VII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr3:48585557-48585856:-
Coord C1 exon
chr3:48585830-48585856
Coord A exon
chr3:48585690-48585734
Coord C2 exon
chr3:48585557-48585619
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCACTGATTACCCTTCCTAGGGC
3' ss Score
6.94
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGCCAGAAGGGGGAACCTGGAGAGATG
Seq A exon
GGCCTGAGAGGACAAGTTGGGCCTCCTGGCGACCCTGGCCTCCCG
Seq C2 exon
GGCAGGACCGGTGCTCCCGGCCCCCAGGGGCCCCCTGGAAGTGCCACTGCCAAGGGCGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114270-'38-51,'38-50,39-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.3=100)
A:
PF0139113=Collagen=FE(23.3=100)
C2:
PF0139113=Collagen=FE(33.3=100),PF0139113=Collagen=PU(3.0=9.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains