BtaEX6096850 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000601 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2187]
Coordinates
chr23:7293390-7294012:-
Coord C1 exon
chr23:7293959-7294012
Coord A exon
chr23:7293623-7293658
Coord C2 exon
chr23:7293390-7293443
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCTCGTGCCTCATTTCACAGGGA
3' ss Score
9.76
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGCATTCCGGGAGCATCTGGCCCCATTGGTCCTGGAGGGCCCCCCGGCCTCCCT
Seq A exon
GGACCTGCTGGCCCCAAAGGAGCCAAAGGAGCCACA
Seq C2 exon
GGCCCGGCCGGACCTAAGGGAGAGAAGGGCGTCCAGGGCCCTCCGGGACACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000601-'63-63,'63-62,64-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.3=100)
A:
PF0139113=Collagen=FE(18.3=100)
C2:
PF0139113=Collagen=FE(28.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTCCGGGAGCATCTG
R:
GGACGCCCTTCTCTCCCTTAG
Band lengths:
88-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]