GgaEX6015371 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8233096-8234426:+
Coord C1 exon
chr17:8233096-8233149
Coord A exon
chr17:8233538-8233573
Coord C2 exon
chr17:8234373-8234426
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTTTCTCTATGCAGGGT
3' ss Score
10.13
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GGTATCACAGGTCCCTCTGGACCAATTGGACCCCCAGGGCCACCAGGATTACCG
Seq A exon
GGTCCACCTGGTCCCAAAGGTGCTAAAGGATCATCA
Seq C2 exon
GGTCCAACGGGTCCAAAGGGTGAATCGGGTCTTCCTGGGCCTCCAGGGCCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'68-71,'68-70,69-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(15.1=72.2),PF0139113=Collagen=FE(27.0=100)
A:
PF0139113=Collagen=PD(9.9=58.3),PF0139113=Collagen=FE(17.5=100)
C2:
PF0139113=Collagen=FE(27.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATCACAGGTCCCTCTGGA
R:
TGGAGGCCCAGGAAGACC
Band lengths:
99-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]