GgaEX6015371 @ galGal4
Exon Skipping
Gene
ENSGALG00000002546 | COL5A1
Description
collagen alpha-1(V) chain precursor [Source:RefSeq peptide;Acc:NP_990121]
Coordinates
chr17:7551397-7552727:+
Coord C1 exon
chr17:7551397-7551450
Coord A exon
chr17:7551839-7551874
Coord C2 exon
chr17:7552674-7552727
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTTTCTCTATGCAGGGT
3' ss Score
10.13
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GGTATCACAGGTCCCTCTGGACCAATTGGACCCCCAGGGCCACCAGGATTACCG
Seq A exon
GGTCCACCTGGTCCCAAAGGTGCTAAAGGATCATCA
Seq C2 exon
GGTCCAACGGGTCCAAAGGGTGAATCGGGTCTTCCTGGGCCTCCAGGGCCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'73-68,'73-67,74-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(7.6=44.4),PF0139113=Collagen=FE(27.0=100)
A:
PF0139113=Collagen=FE(17.5=100)
C2:
PF0139113=Collagen=FE(27.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATCACAGGTCCCTCTGGA
R:
TGGAGGCCCAGGAAGACC
Band lengths:
99-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]