RnoEX6016114 @ rn6
Exon Skipping
Gene
ENSRNOG00000008749 | Col5a1
Description
collagen type V alpha 1 chain [Source:RGD Symbol;Acc:70920]
Coordinates
chr3:6562481-6565410:+
Coord C1 exon
chr3:6562481-6562534
Coord A exon
chr3:6563244-6563279
Coord C2 exon
chr3:6565357-6565410
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTGATCTTTGCCCTCTGCAGGGC
3' ss Score
10.24
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
GGCATTACAGGTCCTTCTGGCCCGCTTGGGCCTCCTGGTCCCCCAGGCTTGCCG
Seq A exon
GGCCCTCCAGGTCCCAAAGGTGCTAAAGGTTCATCG
Seq C2 exon
GGTCCCACTGGCCCGAAGGGCGAGGCAGGCCATCCAGGACTCCCTGGTCCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008749-'87-73,'87-71,88-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(15.2=55.6),PF0139113=Collagen=FE(28.3=100)
A:
PF0139113=Collagen=FE(18.3=100)
C2:
PF0139113=Collagen=FE(28.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTACAGGTCCTTCTGGCC
R:
GGGTGGACCAGGGAGTCC
Band lengths:
107-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]