RnoEX0022781 @ rn6
Exon Skipping
Gene
ENSRNOG00000000463 | Col11a2
Description
collagen type XI alpha 2 chain [Source:RGD Symbol;Acc:2373]
Coordinates
chr20:3855540-3856035:+
Coord C1 exon
chr20:3855540-3855593
Coord A exon
chr20:3855759-3855794
Coord C2 exon
chr20:3855982-3856035
Length
36 bp
Sequences
Splice sites
3' ss Seq
CCCCTTCTGTTCACTTACAGGGA
3' ss Score
11.71
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGTATCCCAGGAGCATCTGGTCCTATCGGTCCTGGAGGACCTCCTGGCCTGCCT
Seq A exon
GGACCGTCCGGCCCCAAAGGAGCTAAAGGAGCCACA
Seq C2 exon
GGCCCCGCTGGACCCAAAGGAGAGAAAGGTGTTCAGGGCCCTCCAGGACACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000463-'71-64,'71-63,72-64
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(14.1=55.6),PF0139113=Collagen=FE(27.9=100)
A:
PF0139113=Collagen=PD(3.7=25.0),PF0139113=Collagen=FE(18.0=100)
C2:
PF0139113=Collagen=FE(27.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTGGTCCTATCGGTCCT
R:
GTCCTGGAGGGCCCTGAAC
Band lengths:
91-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]