HsaEX6046573 @ hg19
Exon Skipping
Gene
ENSG00000204248 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:2187]
Coordinates
chr6:33133708-33134343:-
Coord C1 exon
chr6:33134290-33134343
Coord A exon
chr6:33133948-33133983
Coord C2 exon
chr6:33133708-33133761
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTCCTCATTTCACAGGGA
3' ss Score
9.98
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGTATCCCAGGAGCATCCGGCCCCATTGGTCCTGGAGGTCCCCCCGGCCTCCCC
Seq A exon
GGACCTGCTGGCCCCAAAGGAGCCAAAGGAGCCACA
Seq C2 exon
GGCCCAGGCGGACCCAAGGGAGAGAAGGGTGTGCAGGGCCCTCCAGGACACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204248-'64-63,'64-62,65-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(15.8=66.7),PF0139113=Collagen=FE(28.3=100)
A:
PF0139113=Collagen=FE(17.5=100)
C2:
PF0139113=Collagen=FE(27.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATCCCAGGAGCATCCGG
R:
GTGTCCTGGAGGGCCCTG
Band lengths:
105-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)