DreEX0022843 @ danRer10
Exon Skipping
Gene
ENSDARG00000012422 | col11a2
Description
collagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]
Coordinates
chr19:7267076-7267448:-
Coord C1 exon
chr19:7267395-7267448
Coord A exon
chr19:7267230-7267265
Coord C2 exon
chr19:7267076-7267129
Length
36 bp
Sequences
Splice sites
3' ss Seq
GGATGTATTATTTCTCACAGGGC
3' ss Score
6.11
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GGTATATCTGGAGGAACTGGTCCACTTGGTCCTGCAGGTCCTGCTGGTATGCCT
Seq A exon
GGCCCGAGGGGTGTCAAAGGAGCTAAAGGTGCCAGT
Seq C2 exon
GGTGGGGCTGGTCCTAAAGGAGAAAAGGGTGTACAAGGACCACCAGGACCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012422-'67-66,'67-65,68-66
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(21.4=83.3),PF0139113=Collagen=PU(29.8=94.4)
A:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(18.3=100)
C2:
PF0139113=Collagen=FE(28.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATATCTGGAGGAACTGGTC
R:
GGTCCTGGTGGTCCTTGTACA
Band lengths:
104-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]