BtaEX6096935 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001634 | PHF1
Description
PHD finger protein 1 [Source:HGNC Symbol;Acc:HGNC:8919]
Coordinates
chr23:7532170-7532799:+
Coord C1 exon
chr23:7532170-7532237
Coord A exon
chr23:7532397-7532501
Coord C2 exon
chr23:7532610-7532799
Length
105 bp
Sequences
Splice sites
3' ss Seq
CATTTCTCTCCTCATCCCAGTTT
3' ss Score
6.86
5' ss Seq
CAGGTCACT
5' ss Score
3.41
Exon sequences
Seq C1 exon
CTCTCAGAAACCCCCAAGGGAGAACGGTCTTCCAAGCTCCTCTCCGCTCTCAACAGCCACAAGGACCG
Seq A exon
TTTCATTTCAGGGAGGGAGATTAAGAAGAGGAAATGCTTGTTTGGTCTCCATGCTCGGATCCCTCCCCCTGTGGAGCCCCCTCCTGGAGACGGAGCCCCCACCAG
Seq C2 exon
CTTCCCTTCAGGGCAGGGCCCTGGGGGAGGGGTCTCACGTCCCCTGGGGAAGCGCCGGAGGCCGGAGCCAGAGCCCCTGAGGAGGAGGCAGAAGGGGAAAATGGAGGAGCTGGGGCCACCCTCAGCAGTGCGCAACCAGCCCGAGCCCCAGGAGCAGAGGGAGCGGGCTCGTCTGCAAAGGGCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001634-'13-16,'13-14,14-16=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=0.500 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAGAAACCCCCAAGG
R:
CCTTTGCAGACGAGCCCG
Band lengths:
249-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]