MmuEX0034702 @ mm10
Exon Skipping
Gene
ENSMUSG00000024193 | Phf1
Description
PHD finger protein 1 [Source:MGI Symbol;Acc:MGI:98647]
Coordinates
chr17:26936124-26936865:+
Coord C1 exon
chr17:26936124-26936191
Coord A exon
chr17:26936287-26936391
Coord C2 exon
chr17:26936771-26936865
Length
105 bp
Sequences
Splice sites
3' ss Seq
CGACATTCCCCTTGTCCCAGTTT
3' ss Score
4.57
5' ss Seq
CAGGTCACT
5' ss Score
3.41
Exon sequences
Seq C1 exon
CTCTCAGATACTCCCAAGGGAGAGCGCTCTTCCCAGCTCCTTTCTGCTCTTAACAGCCACAAGGACCG
Seq A exon
TTTCATTTCAGGGAGGGAGATTAAAAAGCGAAAATGTCTTTTTGGTCTCCATGCTCGGACCCCTCCTCCTGTGGAGCTTCTCACTGGAGATGGAGCCCCCACCAG
Seq C2 exon
GCCTCGGTGTCTCCACCACCCCCCAGCCCTAACCAGAGCTATGAGGGCAGCAGCGGCTACAACTTCCGGCCCACAGACGCCCGCTGTCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024193_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.361 C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAGATACTCCCAAGGGA
R:
AGACAGCGGGCGTCTGTG
Band lengths:
157-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types