RnoEX0065275 @ rn6
Exon Skipping
Gene
ENSRNOG00000000480 | Phf1
Description
PHD finger protein 1 [Source:RGD Symbol;Acc:1303205]
Coordinates
chr20:5530003-5530560:+
Coord C1 exon
chr20:5530003-5530070
Coord A exon
chr20:5530166-5530270
Coord C2 exon
chr20:5530392-5530560
Length
105 bp
Sequences
Splice sites
3' ss Seq
GGATTTCCCCCTTGTCCCAGTTT
3' ss Score
5.06
5' ss Seq
CAGGTCACT
5' ss Score
3.41
Exon sequences
Seq C1 exon
CTTTCAGACACTCCCAAAGGAGAACGCTCTTCCAAGCTCCTTTCTGCCCTTAACAGCCACAAGGACCG
Seq A exon
TTTCATTTCAGGGAGGGAGATTAAAAAGAGGAAATGCCTTTTTGGTCTCCATGCTCGGACCCCTCCTCCTGTGGAGCTTCTCACTGGAGATGGATCCCCCACCAG
Seq C2 exon
CTTCCCTTCAGGGCAGGGCCCTGGGGGAGGGGTCTCACGTCCCCTGGGGAAACGCCGGAAGTCGGAGCCAGAACCCTTGAGGAGGAGGCAGAAGGGGAAAGTGGAGGAACTGGGGCCACCCACAGCAGCTCACAGTCGGCATGGGTCCCAGGAGCAGAGGGCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000480-'13-22,'13-21,14-22
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.361 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCAGACACTCCCAAAGGA
R:
CAGGGCCCTCTGCTCCTG
Band lengths:
234-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]