HsaEX6046640 @ hg38
Exon Skipping
Gene
ENSG00000112511 | PHF1
Description
PHD finger protein 1 [Source:HGNC Symbol;Acc:HGNC:8919]
Coordinates
chr6:33414477-33415144:+
Coord C1 exon
chr6:33414477-33414544
Coord A exon
chr6:33414725-33414829
Coord C2 exon
chr6:33414966-33415144
Length
105 bp
Sequences
Splice sites
3' ss Seq
CATTTCTCTTCTTGCCCCAGTTT
3' ss Score
7.73
5' ss Seq
CAGGTCACT
5' ss Score
3.41
Exon sequences
Seq C1 exon
CTTTCAGACACCCCCAAAGGAGAACGTTCTTCCAGGCTCCTCTCTGCTCTTAACAGCCACAAGGACCG
Seq A exon
TTTCATTTCAGGGAGAGAGATTAAGAAGAGGAAATGTTTGTTTGGTCTCCATGCTCGGATGCCTCCCCCTGTGGAGCCCCCTACTGGAGATGGAGCACTCACCAG
Seq C2 exon
GGCAGGGCCCTGGGGGAGGGGTCTCACGTCCCCTGGGGAAGCGCCGGAGGCCGGAGCCAGAGCCCCTGAGGAGGAGGCAGAAGGGGAAAGTGGAGGAGCTGGGGCCACCCTCAGCAGTGCGCAATCAGCCCGAGCCCCAGGAGCAGAGGGAGCGGGCTCATCTGCAGAGGGCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112511-'25-29,'25-26,26-29=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=0.500 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACACCCCCAAAGGAGAA
R:
CTCTGCAGATGAGCCCGCTC
Band lengths:
234-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains