BtaEX6100903 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34409216-34414283:-
Coord C1 exon
chr26:34414189-34414283
Coord A exon
chr26:34413540-34413627
Coord C2 exon
chr26:34409216-34409320
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTATATCTACTTTTTGTAGCCA
3' ss Score
6.13
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATATGGCACAAAGCTTGTTTTCACTGTGAAGTTTGCAAGATGATGCTATCAGTGAATAACTTTGTGAGTTACCAGAAAAAGCCATACTGTCACGC
Seq A exon
CCATAACCCCAAGAACAACACTTTTACAAGTGTCTATTACACTCCATTAAATCTAAATGTGCGGAAACCTCCAGAGGCCATTTGTGGG
Seq C2 exon
ATCGGTGGCCAGGAGGATGGTGAACGGTTTAAGTCGGTTTTTCACTGGGACATGAAATCCAAGGATGAGGCCGCCGCACCTAACAGGCAACCACAGGTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.314
Domain overlap (PFAM):
C1:
PF0041217=LIM=FE(55.4=100)
A:
PF0041217=LIM=PD(8.9=16.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGAAGTTTGCAAGATGATGC
R:
CCTGTGGTTGCCTGTTAGGTG
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]