MmuEX6033757 @ mm9
Exon Skipping
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56460475-56463974:-
Coord C1 exon
chr19:56463880-56463974
Coord A exon
chr19:56463239-56463326
Coord C2 exon
chr19:56460475-56460573
Length
88 bp
Sequences
Splice sites
3' ss Seq
GATCTGCGTTAATTTTACAGCCA
3' ss Score
6.96
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ACATGGCACAAAGCATGTTTTCACTGTGAAGTCTGTAAGATGATGCTTTCTGTTAATAACTTCGTGAGTCACCAGAAAAAGCCGTACTGTCACGC
Seq A exon
CCACAACCCTAAGAACAACACGTTCACTAGCGTCTACCACACACCCTTAAATCTAACCTTGAAGAAGTCTGTGGCAGCCATGGGAGGG
Seq C2 exon
ATTGACGGCAAAGAAGATGGCGAGCCATTTAAATCCGTTCTCCATTGGGACATGAAGTCCAAAGCTGGAGCAGGGGCAGCTAGCCGGCTGATGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.152
Domain overlap (PFAM):
C1:
PF0041217=LIM=FE(55.4=100)
A:
PF0041217=LIM=PD(8.9=16.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTTTTCACTGTGAAGTCTGT
R:
CTCATTCATCAGCCGGCTAGC
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: