MmuEX6033757 @ mm10
Exon Skipping
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56385985-56389484:-
Coord C1 exon
chr19:56389390-56389484
Coord A exon
chr19:56388749-56388836
Coord C2 exon
chr19:56385985-56386083
Length
88 bp
Sequences
Splice sites
3' ss Seq
GATCTGCGTTAATTTTACAGCCA
3' ss Score
6.96
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ACATGGCACAAAGCATGTTTTCACTGTGAAGTCTGTAAGATGATGCTTTCTGTTAATAACTTCGTGAGTCACCAGAAAAAGCCGTACTGTCACGC
Seq A exon
CCACAACCCTAAGAACAACACGTTCACTAGCGTCTACCACACACCCTTAAATCTAACCTTGAAGAAGTCTGTGGCAGCCATGGGAGGG
Seq C2 exon
ATTGACGGCAAAGAAGATGGCGAGCCATTTAAATCCGTTCTCCATTGGGACATGAAGTCCAAAGCTGGAGCAGGGGCAGCTAGCCGGCTGATGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134-'1-4,'1-1,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.126
Domain overlap (PFAM):
C1:
PF0041217=LIM=FE(55.4=100)
A:
PF0041217=LIM=PD(8.9=16.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTTTTCACTGTGAAGTCTGT
R:
CTCATTCATCAGCCGGCTAGC
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types