GgaEX1040317 @ galGal4
Exon Skipping
Gene
ENSGALG00000008914 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr6:27033033-27036286:-
Coord C1 exon
chr6:27036192-27036286
Coord A exon
chr6:27035409-27035496
Coord C2 exon
chr6:27033033-27033137
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGCTTCCTTTCTTAGGCA
3' ss Score
11.21
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ACGTGGCATAAAGCCTGTTTTCACTGTGAAGTGTGCAAGATGATGTTAACAGTAAACAACTTTGTTAGCCATGAGAAAAAGCCTTACTGTCAAGT
Seq A exon
GCACAACCCAAAAAACAATGCCTTCACAAGCATATTTGAGACACCAATAAATTTGAATGCCAAAAAACTATCGGAAGTGGTAAGTGAG
Seq C2 exon
GTAAAGTATCGAGAGGAGAGTGAGCAATTCAAATCTGCCTTCCAGTGGGATGTGAGGTCCAGAGACATTGAAGCTGCTTATAAAGCCCAACATCTGTCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914-'4-2,'4-1,6-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0041217=LIM=FE(55.4=100)
A:
PF0041217=LIM=PD(8.9=16.7),PF0088013=Nebulin=PU(55.2=53.3)
C2:
PF0088013=Nebulin=PD(37.9=31.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGTGAAGTGTGCAAGATGA
R:
GCTGGACAGATGTTGGGCTTT
Band lengths:
177-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]