HsaEX6090538 @ hg38
Exon Skipping
Gene
ENSG00000197893 | NRAP
Description
nebulin related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr10:113657470-113663446:-
Coord C1 exon
chr10:113663352-113663446
Coord A exon
chr10:113662679-113662766
Coord C2 exon
chr10:113657470-113657574
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTATACCTATTTGTTGTAGCCA
3' ss Score
5.89
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATATGGCATAAAGCCTGTTTTCACTGTGAAGTTTGCAAGATGATGCTGTCTGTTAATAACTTTGTGAGTCACCAGAAAAAGCCGTACTGTCACGC
Seq A exon
CCATAACCCTAAGAACAACACTTTCACCAGTGTCTATCACACTCCATTAAATCTAAATGTGAGGACATTTCCAGAGGCCATCAGTGGG
Seq C2 exon
ATCCATGACCAAGAAGATGGTGAACAGTGTAAATCAGTTTTTCACTGGGACATGAAATCCAAGGATAAGGAAGGTGCACCTAACAGGCAGCCACTGGCAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197893-'2-4,'2-1,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.343
Domain overlap (PFAM):
C1:
PF0041217=LIM=FE(55.4=100)
A:
PF0041217=LIM=PD(8.9=16.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGTTTTCACTGTGAAGT
R:
CTGCCTGTTAGGTGCACCTTC
Band lengths:
174-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains