DreEX6069954 @ danRer10
Exon Skipping
Gene
ENSDARG00000009341 | nrap
Description
nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
Coordinates
chr12:30472522-30475878:+
Coord C1 exon
chr12:30472522-30472616
Coord A exon
chr12:30472740-30472827
Coord C2 exon
chr12:30475774-30475878
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTATCTCTCATATCTCACAGGCA
3' ss Score
10.12
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AACTGGCACAAAGCATGTTTTCACTGCGAGGTTTGTAAGATGGTTCTGACTGCCAATAATTATGTGAGCCATCAGAAAAGACCATACTGCCAAGT
Seq A exon
GCATAACCCAAAGAACAACACTTTTACAAGTGTTTATGAGACACCAGTCAACATCAATGCAAAGAAGCAATCAGAGGCGGTCAGTGAG
Seq C2 exon
AATAAGTATAAGGAAGAAGGGGAGCGTTTTATGTCCACGTTCCACTATGATATGAGATCCAAAGAAATCGAGCAAGCTCGTAAGGCCAGCCAGCTTGCCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009341-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.162 C2=0.257
Domain overlap (PFAM):
C1:
PF0041217=LIM=FE(55.4=100)
A:
PF0041217=LIM=PD(8.9=16.7),PF0088013=Nebulin=PU(55.2=53.3)
C2:
PF0088013=Nebulin=PD(37.9=31.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATGTTTTCACTGCGAGGT
R:
CTGGCCTTACGAGCTTGCTC
Band lengths:
173-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]