RnoEX0060908 @ rn6
Exon Skipping
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277177317-277181345:-
Coord C1 exon
chr1:277181122-277181345
Coord A exon
chr1:277180098-277180185
Coord C2 exon
chr1:277177317-277177415
Length
88 bp
Sequences
Splice sites
3' ss Seq
GACCTGTATTGATTTTGCAGCCA
3' ss Score
7.37
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
AGAAAGTCAGCGTAGGAAAGTGGAAGTTGGATTCCGAAGGCTCCGGGCGTCCCGAGGAGTTTCATAGTGGTGGGGTTTCGACGGCAGCAGAGACTCATCTAGGGGTTCTAGTGGCTCGTGCCTGTTGCTTCTCCCTGTCTCCCACAGCCAAGATGAACATGCAGGCCTGCTCTAGGTGTGGCTATGGGGTTTACCCTGCTGAGAAGGTCAGCTGCATAGACCAG
Seq A exon
CCATAACCCTAAGAACAACACGTTCACTAGTGTCTACCGCACACCTTTAAATCTGACCTTGAAGAATTCTGTGGCAGCCATGGGTGGG
Seq C2 exon
ACCGACGGCAAAGAAGACGGCGAACAGTTTAAATCCGTTCTCCATTGGGACATGAAGTCCAAGGCCGGAGCGGGGGCGGCTAGCCGGCTGATGAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714_MULTIEX2-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.133 C2=0.212
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(32.1=75.0)
A:
PF0041217=LIM=PD(8.9=16.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGGGTTCTAGTGGCTCGTG
R:
CATGTCCCAATGGAGAACGGA
Band lengths:
179-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]