BtaEX6102842 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011865 | MTA2
Description
Bos taurus metastasis associated 1 family, member 2 (MTA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075712]
Coordinates
chr29:41639626-41640176:-
Coord C1 exon
chr29:41639988-41640176
Coord A exon
chr29:41639810-41639884
Coord C2 exon
chr29:41639626-41639684
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTCTGTCTCTTCAGCTA
3' ss Score
10.98
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTTCATGCAATGGATACGTTGCAGAGGAATGGCTATGATCTGGCTAAGGCCATGTCAACCCTGGTGCCCCAGGGCGGGCCAGTGTTGTGTCGGGATGAGATGGAGGAATGGTCAGCCTCAGAGGCTATGCTGTTTGAAGAGGCCCTGGAGAAGTATGGGAAGGATTTCAATGATATTCGCCAGGACTTT
Seq A exon
CTACCCTGGAAGTCACTGGCCAGCATAGTTCAGTTTTATTACATGTGGAAAACCACAGACCGATACATTCAACAG
Seq C2 exon
AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTAAAACAAGTCTACATCCCTACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011865-'12-12,'12-10,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.040 C2=1.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
A:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAGGCCATGTCAACCCTG
R:
GCTTCAGCAGCTTTCAATCTT
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]