RnoEX6006507 @ rn6
Exon Skipping
Gene
ENSRNOG00000019913 | Mta2
Description
metastasis associated 1 family, member 2 [Source:RGD Symbol;Acc:1306743]
Coordinates
chr1:225145686-225146222:+
Coord C1 exon
chr1:225145686-225145874
Coord A exon
chr1:225145968-225146042
Coord C2 exon
chr1:225146164-225146222
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGCTGTTCGTTTTAGCTA
3' ss Score
9.43
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
TTCCATGCCATGGACACGTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACCCTGGTGCCACAGGGAGGTCCAGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCTATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGACATCCGCCAGGACTTT
Seq A exon
CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGATCGGTATATTCAGCAG
Seq C2 exon
AAAAGACTGAAAGCTGCTGAAGCAGACAGCAAACTAAAACAGGTCTACATCCCCACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019913-'17-16,'17-15,19-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
A:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTCTGTCGGGATGAGAT
R:
AAGTGGGGATGTAGACCTGTT
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]