MmuEX6031357 @ mm10
Exon Skipping
Gene
ENSMUSG00000071646 | Mta2
Description
metastasis-associated gene family, member 2 [Source:MGI Symbol;Acc:MGI:1346340]
Coordinates
chr19:8947252-8947785:+
Coord C1 exon
chr19:8947252-8947440
Coord A exon
chr19:8947525-8947599
Coord C2 exon
chr19:8947727-8947785
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGCTGTTCTTTTTAGCTA
3' ss Score
9.63
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT
Seq A exon
CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG
Seq C2 exon
AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071646-'21-29,'21-22,25-29=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.040 C2=1.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
A:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCTAGTACCACAGGGAGG
R:
CCTGTTTCAGTTTGCTGTCTGC
Band lengths:
176-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types