HsaEX6002407 @ hg19
Exon Skipping
Gene
ENSG00000149480 | MTA2
Description
metastasis associated 1 family, member 2 [Source:HGNC Symbol;Acc:7411]
Coordinates
chr11:62363751-62364297:-
Coord C1 exon
chr11:62364109-62364297
Coord A exon
chr11:62363930-62364004
Coord C2 exon
chr11:62363751-62363809
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTCTGCCCCCCTTAGCTA
3' ss Score
7.46
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
TTTCACGCCATGGATACCTTGCAAAGGAACGGCTACGACCTGGCTAAGGCCATGTCGACCCTGGTACCCCAGGGAGGCCCGGTGCTGTGTCGGGATGAGATGGAGGAATGGTCAGCCTCAGAGGCCATGCTATTTGAGGAGGCCCTAGAGAAGTATGGGAAGGACTTCAATGATATTCGCCAGGATTTT
Seq A exon
CTACCCTGGAAGTCACTTGCCAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG
Seq C2 exon
AAAAGGTTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATTCCCACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149480-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.138 A=0.160 C2=1.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
A:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAGGCCATGTCGACCCTGG
R:
GCTTCAGCAGCTTTCAACCTT
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)