HsaEX6002407 @ hg38
Exon Skipping
Gene
ENSG00000149480 | MTA2
Description
metastasis associated 1 family member 2 [Source:HGNC Symbol;Acc:HGNC:7411]
Coordinates
chr11:62596279-62596825:-
Coord C1 exon
chr11:62596637-62596825
Coord A exon
chr11:62596462-62596532
Coord C2 exon
chr11:62596279-62596337
Length
71 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTCTGCCCCCCTTAGCTA
3' ss Score
7.46
5' ss Seq
TCAGCAGGT
5' ss Score
-3.47
Exon sequences
Seq C1 exon
TTTCACGCCATGGATACCTTGCAAAGGAACGGCTACGACCTGGCTAAGGCCATGTCGACCCTGGTACCCCAGGGAGGCCCGGTGCTGTGTCGGGATGAGATGGAGGAATGGTCAGCCTCAGAGGCCATGCTATTTGAGGAGGCCCTAGAGAAGTATGGGAAGGACTTCAATGATATTCGCCAGGATTTT
Seq A exon
CTACCCTGGAAGTCACTTGCCAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCA
Seq C2 exon
AAAAGGTTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATTCCCACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149480-'23-20,'23-19,24-20
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.138 A=0.160 C2=1.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
A:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAGGCCATGTCGACCCTGG
R:
GCTTCAGCAGCTTTCAACCTT
Band lengths:
169-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains